J3_6GWT_003

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6GWT|1|A|U|686, 6GWT|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GWT_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1289

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GWT|1|A|U|683
6GWT|1|A|G|684
6GWT|1|A|A|685
6GWT|1|A|U|686
6GWT|1|A|C|687
6GWT|1|A|U|688
6GWT|1|A|A|689
*
6GWT|1|A|U|773
6GWT|1|A|G|774
6GWT|1|A|G|775
*
6GWT|1|A|C|791
6GWT|1|A|A|792
6GWT|1|A|A|793
6GWT|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2

Chain z

Apidaecin