J3_6GXP_003

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6GXP|1|A|U|686, 6GXP|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXP_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1329

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GXP|1|A|U|683
6GXP|1|A|G|684
6GXP|1|A|A|685
6GXP|1|A|U|686
6GXP|1|A|C|687
6GXP|1|A|U|688
6GXP|1|A|A|689
*
6GXP|1|A|U|773
6GXP|1|A|G|774
6GXP|1|A|G|775
*
6GXP|1|A|C|791
6GXP|1|A|A|792
6GXP|1|A|A|793
6GXP|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2