J3_6GXP_004

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXP_004 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.1375

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6GXP|1|A|C|698
6GXP|1|A|A|699
6GXP|1|A|G|700
*
6GXP|1|A|C|732
6GXP|1|A|G|733
6GXP|1|A|A|734
6GXP|1|A|A|735
6GXP|1|A|C|736
*
6GXP|1|A|G|760
6GXP|1|A|A|761
6GXP|1|A|U|762
6GXP|1|A|G|763

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2