J3_6GXP_016

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUA*UACCGGUGG*CGGC

Length

16 nucleotides

Bulged bases

6GXP|1|a|U|723

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXP|1|a|G|671
6GXP|1|a|U|672
6GXP|1|a|A|673
*
6GXP|1|a|U|717
6GXP|1|a|A|718
6GXP|1|a|C|719
6GXP|1|a|C|720
6GXP|1|a|G|721
6GXP|1|a|G|722
6GXP|1|a|U|723
6GXP|1|a|G|724
6GXP|1|a|G|725
*
6GXP|1|a|C|732
6GXP|1|a|G|733
6GXP|1|a|G|734
6GXP|1|a|C|735

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain k

30S ribosomal protein S11

Chain r

30S ribosomal protein S18

Chain u

30S ribosomal protein S21