3D structure

PDB id
6GXP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
6GXP|1|a|U|1212, 6GXP|1|a|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GXP_033 not in the Motif Atlas
Homologous match to J3_5J7L_053
Geometric discrepancy: 0.1684
The information below is about J3_5J7L_053
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

6GXP|1|a|C|990
6GXP|1|a|U|991
6GXP|1|a|U|992
6GXP|1|a|G|993
6GXP|1|a|A|994
6GXP|1|a|C|995
6GXP|1|a|A|996
6GXP|1|a|U|997
*
6GXP|1|a|A|1044
6GXP|1|a|C|1045
6GXP|1|a|A|1046
6GXP|1|a|G|1047
*
6GXP|1|a|C|1210
6GXP|1|a|U|1211
6GXP|1|a|U|1212
6GXP|1|a|A|1213
6GXP|1|a|C|1214
6GXP|1|a|G|1215

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain n
30S ribosomal protein S14

Coloring options:


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