J3_6GZ3_013
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6GZ3|1|A2|U|4086, 6GZ3|1|A2|U|4087, 6GZ3|1|A2|C|4088, 6GZ3|1|A2|U|4089, 6GZ3|1|A2|G|4090
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_013 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.3687
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GZ3|1|A2|G|4061
6GZ3|1|A2|G|4062
6GZ3|1|A2|G|4063
6GZ3|1|A2|G|4064
*
6GZ3|1|A2|C|4083
6GZ3|1|A2|G|4084
6GZ3|1|A2|C|4085
6GZ3|1|A2|U|4086
6GZ3|1|A2|U|4087
6GZ3|1|A2|C|4088
6GZ3|1|A2|U|4089
6GZ3|1|A2|G|4090
6GZ3|1|A2|G|4091
6GZ3|1|A2|C|4092
6GZ3|1|A2|G|4093
6GZ3|1|A2|C|4094
6GZ3|1|A2|C|4095
6GZ3|1|A2|A|4096
6GZ3|1|A2|A|4097
6GZ3|1|A2|G|4098
*
6GZ3|1|A2|C|4117
6GZ3|1|A2|G|4118
6GZ3|1|A2|A|4119
6GZ3|1|A2|C|4120
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- Ribosomal protein L8
- Chain AG
- ribosomal protein eL8
- Chain AX
- ribosomal protein uL23
- Chain AZ
- 60S ribosomal protein L27
- Chain Ac
- ribosomal protein eL30
- Chain Ag
- ribosomal protein eL34
- Chain Ap
- ribosomal protein eL43
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