J3_6GZ3_016

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAU*GCUUCUG*CAAGG

Length

15 nucleotides

Bulged bases

6GZ3|1|A2|U|4946, 6GZ3|1|A2|U|4949, 6GZ3|1|A2|A|5019, 6GZ3|1|A2|G|5020

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|A2|C|4928
6GZ3|1|A2|A|4929
6GZ3|1|A2|U|4930
*
6GZ3|1|A2|G|4944
6GZ3|1|A2|C|4945
6GZ3|1|A2|U|4946
6GZ3|1|A2|U|4947
6GZ3|1|A2|C|4948
6GZ3|1|A2|U|4949
6GZ3|1|A2|G|4950
*
6GZ3|1|A2|C|5017
6GZ3|1|A2|A|5018
6GZ3|1|A2|A|5019
6GZ3|1|A2|G|5020
6GZ3|1|A2|G|5021

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AP

ribosomal protein uL22

Chain Ad

ribosomal protein eL31