J3_6GZ3_022
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6GZ3|1|B1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_022 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1135
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GZ3|1|B1|A|938
6GZ3|1|B1|U|939
6GZ3|1|B1|U|940
6GZ3|1|B1|C|941
*
6GZ3|1|B1|G|985
6GZ3|1|B1|G|986
6GZ3|1|B1|A|987
6GZ3|1|B1|C|988
6GZ3|1|B1|C|989
6GZ3|1|B1|A|990
6GZ3|1|B1|G|991
6GZ3|1|B1|A|992
6GZ3|1|B1|G|993
*
6GZ3|1|B1|C|1000
6GZ3|1|B1|A|1001
6GZ3|1|B1|U|1002
6GZ3|1|B1|U|1003
6GZ3|1|B1|U|1004
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain Ap
- ribosomal protein eL43
- Chain BB
- 40S ribosomal protein S3a
- Chain BN
- ribosomal protein uS15
- Chain BO
- ribosomal protein uS11
- Chain Ba
- ribosomal protein eS26
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