J3_6GZ3_026
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 6GZ3|1|B1|A|1240, 6GZ3|1|B1|G|1256, 6GZ3|1|B1|A|1258, 6GZ3|1|B1|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_026 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1844
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6GZ3|1|B1|C|1237
6GZ3|1|B1|U|1238
6GZ3|1|B1|U|1239
6GZ3|1|B1|A|1240
6GZ3|1|B1|A|1241
6GZ3|1|B1|U|1242
6GZ3|1|B1|U|1243
6GZ3|1|B1|U|1244
*
6GZ3|1|B1|G|1255
6GZ3|1|B1|G|1256
6GZ3|1|B1|G|1257
6GZ3|1|B1|A|1258
6GZ3|1|B1|A|1259
6GZ3|1|B1|A|1260
6GZ3|1|B1|C|1261
6GZ3|1|B1|C|1262
6GZ3|1|B1|U|1263
6GZ3|1|B1|C|1264
6GZ3|1|B1|A|1265
6GZ3|1|B1|C|1266
*
6GZ3|1|B1|G|1516
6GZ3|1|B1|G|1517
6GZ3|1|B1|C|1518
6GZ3|1|B1|U|1519
6GZ3|1|B1|G|1520
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BK
- ribosomal protein eS10
- Chain BP
- ribosomal protein uS19
- Chain BS
- ribosomal protein uS13
- Chain BU
- ribosomal protein uS10
- Chain Bd
- ribosomal protein uS14
- Chain Bf
- Ribosomal protein S27a
- Chain Bv
- Transfer RNA; tRNA
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