J3_6GZ3_040

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

6GZ3|1|B1|A|226, 6GZ3|1|B1|U|227, 6GZ3|1|B1|C|228, 6GZ3|1|B1|C|284, 6GZ3|1|B1|U|285, 6GZ3|1|B1|U|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|B1|C|223
6GZ3|1|B1|A|224
6GZ3|1|B1|G|225
6GZ3|1|B1|A|226
6GZ3|1|B1|U|227
6GZ3|1|B1|C|228
6GZ3|1|B1|A|229
6GZ3|1|B1|A|230
6GZ3|1|B1|A|231
6GZ3|1|B1|A|232
6GZ3|1|B1|C|233
6GZ3|1|B1|C|234
6GZ3|1|B1|A|235
6GZ3|1|B1|A|236
6GZ3|1|B1|C|237
6GZ3|1|B1|C|238
*
6GZ3|1|B1|G|283
6GZ3|1|B1|C|284
6GZ3|1|B1|U|285
6GZ3|1|B1|U|286
6GZ3|1|B1|U|287
6GZ3|1|B1|G|288
*
6GZ3|1|B1|C|295
6GZ3|1|B1|U|296
6GZ3|1|B1|A|297
6GZ3|1|B1|G|298

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

ribosomal protein eS4

Chain BG

40S ribosomal protein S6

Chain BI

ribosomal protein eS8

Chain BL

Ribosomal protein S11