J3_6GZ3_043

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGCAGUCCGCC*GCGGUGCG*CGACGUC

Length

27 nucleotides

Bulged bases

6GZ3|1|A2|A|446, 6GZ3|1|A2|G|447, 6GZ3|1|A2|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ3|1|A2|G|442
6GZ3|1|A2|C|443
6GZ3|1|A2|G|444
6GZ3|1|A2|C|445
6GZ3|1|A2|A|446
6GZ3|1|A2|G|447
6GZ3|1|A2|U|448
6GZ3|1|A2|C|449
6GZ3|1|A2|C|450
6GZ3|1|A2|G|451
6GZ3|1|A2|C|452
6GZ3|1|A2|C|453
*
6GZ3|1|A2|G|689
6GZ3|1|A2|C|690
6GZ3|1|A2|G|691
6GZ3|1|A2|G|692
6GZ3|1|A2|U|693
6GZ3|1|A2|G|694
6GZ3|1|A2|C|695
6GZ3|1|A2|G|696
*
6GZ3|1|A2|C|1275
6GZ3|1|A2|G|1276
6GZ3|1|A2|A|1277
6GZ3|1|A2|C|1278
6GZ3|1|A2|G|1279
6GZ3|1|A2|U|1280
6GZ3|1|A2|C|1281

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain Ae

ribosomal protein eL32

Chain Af

ribosomal protein eL33

Chain At

ribosomal protein eL28