J3_6GZ5_010

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6GZ5|1|A2|G|2741

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|A|2530
6GZ5|1|A2|G|2531
6GZ5|1|A2|A|2532
6GZ5|1|A2|U|2533
6GZ5|1|A2|G|2534
*
6GZ5|1|A2|C|2551
6GZ5|1|A2|A|2552
6GZ5|1|A2|G|2553
6GZ5|1|A2|U|2554
*
6GZ5|1|A2|A|2736
6GZ5|1|A2|G|2737
6GZ5|1|A2|G|2738
6GZ5|1|A2|G|2739
6GZ5|1|A2|U|2740
6GZ5|1|A2|G|2741
6GZ5|1|A2|U|2742
6GZ5|1|A2|A|2743
6GZ5|1|A2|A|2744
6GZ5|1|A2|A|2745
6GZ5|1|A2|U|2746

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

ribosomal protein eL27