3D structure

PDB id
6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UGGA*UUAAGA*UA
Length
12 nucleotides
Bulged bases
6GZ5|1|B1|G|921
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GZ5|1|B1|U|682
6GZ5|1|B1|G|683
6GZ5|1|B1|G|684
6GZ5|1|B1|A|685
*
6GZ5|1|B1|U|917
6GZ5|1|B1|U|918
6GZ5|1|B1|A|919
6GZ5|1|B1|A|920
6GZ5|1|B1|G|921
6GZ5|1|B1|A|922
*
6GZ5|1|B1|U|1022
6GZ5|1|B1|A|1023

Current chains

Chain B1
18S ribosomal RNA

Nearby chains

Chain BH
ribosomal protein eS7
Chain BL
ribosomal protein uS17
Chain BN
ribosomal protein uS15
Chain BW
ribosomal protein uS8
Chain BX
ribosomal protein uS12
Chain Bb
ribosomal protein eS27

Coloring options:

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