J3_6GZ5_030

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCCAAGUC*GGCCCAGCC*GGACGGUGUGAGGCCGGUAGCG

Length

39 nucleotides

Bulged bases

6GZ5|1|A2|U|197, 6GZ5|1|A2|C|212, 6GZ5|1|A2|C|213, 6GZ5|1|A2|C|214, 6GZ5|1|A2|A|215, 6GZ5|1|A2|U|228, 6GZ5|1|A2|G|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|C|191
6GZ5|1|A2|C|192
6GZ5|1|A2|C|193
6GZ5|1|A2|A|194
6GZ5|1|A2|A|195
6GZ5|1|A2|G|196
6GZ5|1|A2|U|197
6GZ5|1|A2|C|198
*
6GZ5|1|A2|G|210
6GZ5|1|A2|G|211
6GZ5|1|A2|C|212
6GZ5|1|A2|C|213
6GZ5|1|A2|C|214
6GZ5|1|A2|A|215
6GZ5|1|A2|G|216
6GZ5|1|A2|C|217
6GZ5|1|A2|C|218
*
6GZ5|1|A2|G|222
6GZ5|1|A2|G|223
6GZ5|1|A2|A|224
6GZ5|1|A2|C|225
6GZ5|1|A2|G|226
6GZ5|1|A2|G|227
6GZ5|1|A2|U|228
6GZ5|1|A2|G|229
6GZ5|1|A2|U|230
6GZ5|1|A2|G|231
6GZ5|1|A2|A|232
6GZ5|1|A2|G|233
6GZ5|1|A2|G|234
6GZ5|1|A2|C|235
6GZ5|1|A2|C|236
6GZ5|1|A2|G|237
6GZ5|1|A2|G|238
6GZ5|1|A2|U|239
6GZ5|1|A2|A|240
6GZ5|1|A2|G|241
6GZ5|1|A2|C|242
6GZ5|1|A2|G|243

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

ribosomal protein uL4

Chain AY

ribosomal protein uL24