J3_6GZ5_033

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGCAGUCCGCCC*GGCGGUGCG*CGACGUC

Length

29 nucleotides

Bulged bases

6GZ5|1|A2|A|446, 6GZ5|1|A2|G|447, 6GZ5|1|A2|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|G|442
6GZ5|1|A2|C|443
6GZ5|1|A2|G|444
6GZ5|1|A2|C|445
6GZ5|1|A2|A|446
6GZ5|1|A2|G|447
6GZ5|1|A2|U|448
6GZ5|1|A2|C|449
6GZ5|1|A2|C|450
6GZ5|1|A2|G|451
6GZ5|1|A2|C|452
6GZ5|1|A2|C|453
6GZ5|1|A2|C|454
*
6GZ5|1|A2|G|688
6GZ5|1|A2|G|689
6GZ5|1|A2|C|690
6GZ5|1|A2|G|691
6GZ5|1|A2|G|692
6GZ5|1|A2|U|693
6GZ5|1|A2|G|694
6GZ5|1|A2|C|695
6GZ5|1|A2|G|696
*
6GZ5|1|A2|C|1275
6GZ5|1|A2|G|1276
6GZ5|1|A2|A|1277
6GZ5|1|A2|C|1278
6GZ5|1|A2|G|1279
6GZ5|1|A2|U|1280
6GZ5|1|A2|C|1281

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain Ae

ribosomal protein eL32

Chain Af

ribosomal protein eL33

Chain At

ribosomal protein eL28