J3_6GZ5_034
3D structure
- PDB id
- 6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCGC*GCACGGGGU
- Length
- 35 nucleotides
- Bulged bases
- 6GZ5|1|A2|A|947, 6GZ5|1|A2|G|950, 6GZ5|1|A2|A|953, 6GZ5|1|A2|C|954, 6GZ5|1|A2|C|955, 6GZ5|1|A2|C|956, 6GZ5|1|A2|G|957, 6GZ5|1|A2|U|958, 6GZ5|1|A2|G|1264
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GZ5|1|A2|A|702
6GZ5|1|A2|C|703
6GZ5|1|A2|C|704
*
6GZ5|1|A2|G|942
6GZ5|1|A2|A|943
6GZ5|1|A2|G|944
6GZ5|1|A2|G|945
6GZ5|1|A2|G|946
6GZ5|1|A2|A|947
6GZ5|1|A2|G|948
6GZ5|1|A2|C|949
6GZ5|1|A2|G|950
6GZ5|1|A2|A|951
6GZ5|1|A2|G|952
6GZ5|1|A2|A|953
6GZ5|1|A2|C|954
6GZ5|1|A2|C|955
6GZ5|1|A2|C|956
6GZ5|1|A2|G|957
6GZ5|1|A2|U|958
6GZ5|1|A2|C|959
6GZ5|1|A2|G|960
6GZ5|1|A2|C|961
6GZ5|1|A2|C|962
6GZ5|1|A2|G|963
6GZ5|1|A2|C|964
*
6GZ5|1|A2|G|1260
6GZ5|1|A2|C|1261
6GZ5|1|A2|A|1262
6GZ5|1|A2|C|1263
6GZ5|1|A2|G|1264
6GZ5|1|A2|G|1265
6GZ5|1|A2|G|1266
6GZ5|1|A2|G|1267
6GZ5|1|A2|U|1268
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AC
- ribosomal protein uL4
- Chain AE
- ribosomal protein eL6
- Chain AF
- ribosomal protein uL30
- Chain Ae
- ribosomal protein eL32
- Chain Af
- ribosomal protein eL33
- Chain At
- ribosomal protein eL28
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