J3_6GZ5_041

3D structure

PDB id

6GZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-3 (TI-POST-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCGGUUG*CCCUUC*GCACCGCACGUUCGUGG

Length

31 nucleotides

Bulged bases

6GZ5|1|A2|U|4839, 6GZ5|1|A2|U|4840, 6GZ5|1|A2|A|4896, 6GZ5|1|A2|C|4898, 6GZ5|1|A2|A|4901, 6GZ5|1|A2|C|4902, 6GZ5|1|A2|U|4908

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GZ5|1|A2|C|4709
6GZ5|1|A2|U|4710
6GZ5|1|A2|C|4711
6GZ5|1|A2|G|4712
6GZ5|1|A2|G|4713
6GZ5|1|A2|U|4714
6GZ5|1|A2|U|4715
6GZ5|1|A2|G|4716
*
6GZ5|1|A2|C|4836
6GZ5|1|A2|C|4837
6GZ5|1|A2|C|4838
6GZ5|1|A2|U|4839
6GZ5|1|A2|U|4840
6GZ5|1|A2|C|4841
*
6GZ5|1|A2|G|4894
6GZ5|1|A2|C|4895
6GZ5|1|A2|A|4896
6GZ5|1|A2|C|4897
6GZ5|1|A2|C|4898
6GZ5|1|A2|G|4899
6GZ5|1|A2|C|4900
6GZ5|1|A2|A|4901
6GZ5|1|A2|C|4902
6GZ5|1|A2|G|4903
6GZ5|1|A2|U|4904
6GZ5|1|A2|U|4905
6GZ5|1|A2|C|4906
6GZ5|1|A2|G|4907
6GZ5|1|A2|U|4908
6GZ5|1|A2|G|4909
6GZ5|1|A2|G|4910

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

ribosomal protein eL6

Chain AM

ribosomal protein eL14

Chain AO

ribosomal protein uL13

Chain Af

ribosomal protein eL33