J3_6GZQ_003

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

6GZQ|1|A1|U|289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_003 not in the Motif Atlas

Homologous match to J3_7RQB_003

Geometric discrepancy: 0.2469

The information below is about J3_7RQB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97921.1

Basepair signature

cWW-F-F-tSH-tWH-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A1|U|259
6GZQ|1|A1|A|260
6GZQ|1|A1|A|261
6GZQ|1|A1|A|262
6GZQ|1|A1|C|263
*
6GZQ|1|A1|G|283
6GZQ|1|A1|G|284
6GZQ|1|A1|G|285
6GZQ|1|A1|U|286
6GZQ|1|A1|C|287
6GZQ|1|A1|G|288
6GZQ|1|A1|U|289
6GZQ|1|A1|G|290
*
6GZQ|1|A1|C|397
6GZQ|1|A1|G|398

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain W1

50S ribosomal protein L28