J3_6GZQ_004

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

6GZQ|1|A1|G|735, 6GZQ|1|A1|G|841

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_004 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.1695

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GZQ|1|A1|C|732
6GZQ|1|A1|G|733
6GZQ|1|A1|A|734
6GZQ|1|A1|G|735
6GZQ|1|A1|C|736
6GZQ|1|A1|U|737
6GZQ|1|A1|A|738
*
6GZQ|1|A1|U|822
6GZQ|1|A1|A|823
6GZQ|1|A1|G|824
*
6GZQ|1|A1|C|840
6GZQ|1|A1|G|841
6GZQ|1|A1|A|842
6GZQ|1|A1|G|843

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain C1

50S ribosomal protein L2

Chain c1

50S ribosomal protein L34