J3_6GZQ_007

3D structure

PDB id

6GZQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus hibernating 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

6GZQ|1|A1|A|1657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZQ_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1405

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6GZQ|1|A1|C|1354
6GZQ|1|A1|A|1355
6GZQ|1|A1|A|1356
6GZQ|1|A1|G|1357
*
6GZQ|1|A1|C|1653
6GZQ|1|A1|G|1654
6GZQ|1|A1|C|1655
6GZQ|1|A1|A|1656
6GZQ|1|A1|A|1657
6GZQ|1|A1|A|1658
6GZQ|1|A1|C|1659
*
6GZQ|1|A1|G|1668
6GZQ|1|A1|U|1669
6GZQ|1|A1|G|1670

Current chains

Chain A1

23S ribosomal RNA

Nearby chains

Chain c1

50S ribosomal protein L34