J3_6GZQ_012
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CC*GUGGAU*AAUCG
- Length
- 13 nucleotides
- Bulged bases
- 6GZQ|1|A1|G|2845, 6GZQ|1|A1|A|2847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_012 not in the Motif Atlas
- Homologous match to J3_7RQB_014
- Geometric discrepancy: 0.1355
- The information below is about J3_7RQB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95952.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GZQ|1|A1|C|2826
6GZQ|1|A1|C|2827
*
6GZQ|1|A1|G|2843
6GZQ|1|A1|U|2844
6GZQ|1|A1|G|2845
6GZQ|1|A1|G|2846
6GZQ|1|A1|A|2847
6GZQ|1|A1|U|2848
*
6GZQ|1|A1|A|2894
6GZQ|1|A1|A|2895
6GZQ|1|A1|U|2896
6GZQ|1|A1|C|2897
6GZQ|1|A1|G|2898
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain D1
- 50S ribosomal protein L3
- Chain M1
- 50S ribosomal protein L17
- Chain a1
- 50S ribosomal protein L32
Coloring options: