J3_6GZQ_026
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 6GZQ|1|A1|U|2404, 6GZQ|1|A1|A|2440
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_026 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.1625
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6GZQ|1|A1|G|2296
6GZQ|1|A1|C|2297
6GZQ|1|A1|C|2298
*
6GZQ|1|A1|G|2398
6GZQ|1|A1|C|2399
6GZQ|1|A1|C|2400
6GZQ|1|A1|U|2401
6GZQ|1|A1|A|2402
6GZQ|1|A1|G|2403
6GZQ|1|A1|U|2404
6GZQ|1|A1|G|2405
6GZQ|1|A1|A|2406
6GZQ|1|A1|A|2407
6GZQ|1|A1|C|2408
6GZQ|1|A1|C|2409
*
6GZQ|1|A1|G|2435
6GZQ|1|A1|A|2436
6GZQ|1|A1|U|2437
6GZQ|1|A1|C|2438
6GZQ|1|A1|A|2439
6GZQ|1|A1|A|2440
6GZQ|1|A1|C|2441
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain K1
- 50S ribosomal protein L15
- Chain V1
- 50S ribosomal protein L27
- Chain W1
- 50S ribosomal protein L28
- Chain b1
- 50S ribosomal protein L33
- Chain d1
- 50S ribosomal protein L35
Coloring options: