J3_6GZQ_027
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- CUCAG*CGGAGAG*UAGAAG
- Length
- 18 nucleotides
- Bulged bases
- 6GZQ|1|A1|G|2348, 6GZQ|1|A1|A|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_027 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.482
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
6GZQ|1|A1|C|2309
6GZQ|1|A1|U|2310
6GZQ|1|A1|C|2311
6GZQ|1|A1|A|2312
6GZQ|1|A1|G|2313
*
6GZQ|1|A1|C|2331
6GZQ|1|A1|G|2332
6GZQ|1|A1|G|2333
6GZQ|1|A1|A|2334
6GZQ|1|A1|G|2335
6GZQ|1|A1|A|2336
6GZQ|1|A1|G|2337
*
6GZQ|1|A1|U|2346
6GZQ|1|A1|A|2347
6GZQ|1|A1|G|2348
6GZQ|1|A1|A|2349
6GZQ|1|A1|A|2350
6GZQ|1|A1|G|2351
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain B1
- 5S ribosomal RNA; 5S rRNA
- Chain F1
- 50S ribosomal protein L5
- Chain N1
- 50S ribosomal protein L18
- Chain V1
- 50S ribosomal protein L27
Coloring options: