J3_6GZQ_033
3D structure
- PDB id
- 6GZQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus hibernating 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.28 Å
Loop
- Sequence
- AC*GAUAAGC*GAUGU
- Length
- 14 nucleotides
- Bulged bases
- 6GZQ|1|A1|A|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZQ_033 not in the Motif Atlas
- Homologous match to J3_4WF9_013
- Geometric discrepancy: 0.1885
- The information below is about J3_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6GZQ|1|A1|A|55
6GZQ|1|A1|C|56
*
6GZQ|1|A1|G|69
6GZQ|1|A1|A|70
6GZQ|1|A1|U|71
6GZQ|1|A1|A|72
6GZQ|1|A1|A|73
6GZQ|1|A1|G|74
6GZQ|1|A1|C|75
*
6GZQ|1|A1|G|108
6GZQ|1|A1|A|109
6GZQ|1|A1|U|110
6GZQ|1|A1|G|111
6GZQ|1|A1|U|112
Current chains
- Chain A1
- 23S ribosomal RNA
Nearby chains
- Chain S1
- 50S ribosomal protein L23
- Chain X1
- 50S ribosomal protein L29
- Chain c1
- 50S ribosomal protein L34
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