J3_6H4N_029

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

6H4N|1|A|U|321, 6H4N|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H4N_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.068

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6H4N|1|A|G|297
6H4N|1|A|G|298
6H4N|1|A|A|299
6H4N|1|A|A|300
6H4N|1|A|G|301
*
6H4N|1|A|C|316
6H4N|1|A|G|317
6H4N|1|A|C|318
6H4N|1|A|G|319
6H4N|1|A|A|320
6H4N|1|A|U|321
6H4N|1|A|A|322
6H4N|1|A|C|323
6H4N|1|A|A|324
6H4N|1|A|G|325
*
6H4N|1|A|C|337
6H4N|1|A|G|338
6H4N|1|A|U|339
6H4N|1|A|A|340
6H4N|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24