3D structure

PDB id
6H4N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
6H4N|1|A|U|2390, 6H4N|1|A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6H4N_031 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.08
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

6H4N|1|A|G|2282
6H4N|1|A|C|2283
6H4N|1|A|A|2284
*
6H4N|1|A|U|2384
6H4N|1|A|C|2385
6H4N|1|A|A|2386
6H4N|1|A|U|2387
6H4N|1|A|A|2388
6H4N|1|A|G|2389
6H4N|1|A|U|2390
6H4N|1|A|G|2391
6H4N|1|A|A|2392
6H4N|1|A|U|2393
6H4N|1|A|C|2394
6H4N|1|A|C|2395
*
6H4N|1|A|G|2421
6H4N|1|A|C|2422
6H4N|1|A|U|2423
6H4N|1|A|C|2424
6H4N|1|A|A|2425
6H4N|1|A|A|2426
6H4N|1|A|C|2427

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain w
Transfer RNA; tRNA

Coloring options:


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