J3_6H4N_034

3D structure

PDB id

6H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1 - 70S Hibernating E. coli Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6H4N|1|a|U|1212, 6H4N|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6H4N_034 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1235

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6H4N|1|a|C|990
6H4N|1|a|U|991
6H4N|1|a|U|992
6H4N|1|a|G|993
6H4N|1|a|A|994
6H4N|1|a|C|995
6H4N|1|a|A|996
6H4N|1|a|U|997
*
6H4N|1|a|A|1044
6H4N|1|a|C|1045
6H4N|1|a|A|1046
6H4N|1|a|G|1047
*
6H4N|1|a|C|1210
6H4N|1|a|U|1211
6H4N|1|a|U|1212
6H4N|1|a|A|1213
6H4N|1|a|C|1214
6H4N|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14