J3_6HHQ_020
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAG*CAG*UCGAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_020 not in the Motif Atlas
- Homologous match to J3_8C3A_035
- Geometric discrepancy: 0.1198
- The information below is about J3_8C3A_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_00811.1
- Basepair signature
- cWW-tWW-F-cWW-F-tHS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6HHQ|1|A|A|760
6HHQ|1|A|G|761
6HHQ|1|A|A|762
6HHQ|1|A|G|763
*
6HHQ|1|A|C|773
6HHQ|1|A|A|774
6HHQ|1|A|G|775
*
6HHQ|1|A|U|785
6HHQ|1|A|C|786
6HHQ|1|A|G|787
6HHQ|1|A|A|788
6HHQ|1|A|A|789
6HHQ|1|A|U|790
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S4-A
- Chain K
- 40S ribosomal protein S9-A
- Chain Z
- 40S ribosomal protein S24-A
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