J3_6HHQ_025
3D structure
- PDB id
- 6HHQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of compound C45 bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGGAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 6HHQ|1|A|G|1199, 6HHQ|1|A|G|1201, 6HHQ|1|A|A|1203
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6HHQ_025 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.0723
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6HHQ|1|A|C|1180
6HHQ|1|A|U|1181
6HHQ|1|A|U|1182
6HHQ|1|A|A|1183
6HHQ|1|A|A|1184
6HHQ|1|A|U|1185
6HHQ|1|A|U|1186
6HHQ|1|A|U|1187
*
6HHQ|1|A|G|1198
6HHQ|1|A|G|1199
6HHQ|1|A|G|1200
6HHQ|1|A|G|1201
6HHQ|1|A|A|1202
6HHQ|1|A|A|1203
6HHQ|1|A|A|1204
6HHQ|1|A|C|1205
6HHQ|1|A|U|1206
6HHQ|1|A|C|1207
6HHQ|1|A|A|1208
6HHQ|1|A|C|1209
*
6HHQ|1|A|G|1454
6HHQ|1|A|G|1455
6HHQ|1|A|C|1456
6HHQ|1|A|C|1457
6HHQ|1|A|G|1458
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Q
- 40S ribosomal protein S15
- Chain T
- 40S ribosomal protein S18-A
- Chain V
- 40S ribosomal protein S20
- Chain e
- 40S ribosomal protein S29-A
- Chain g
- Ubiquitin-40S ribosomal protein S31
- Chain i
- Suppressor protein STM1
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