J3_6HHQ_068

3D structure

PDB id

6HHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of compound C45 bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

6HHQ|1|A|U|240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6HHQ|1|A|A|213
6HHQ|1|A|G|214
6HHQ|1|A|A|215
6HHQ|1|A|U|216
6HHQ|1|A|A|217
6HHQ|1|A|A|218
6HHQ|1|A|A|219
6HHQ|1|A|A|220
6HHQ|1|A|A|221
6HHQ|1|A|A|222
6HHQ|1|A|U|223
6HHQ|1|A|C|224
6HHQ|1|A|A|225
6HHQ|1|A|A|226
6HHQ|1|A|U|227
6HHQ|1|A|G|228
*
6HHQ|1|A|C|237
6HHQ|1|A|U|238
6HHQ|1|A|C|239
6HHQ|1|A|U|240
6HHQ|1|A|U|241
6HHQ|1|A|U|242
6HHQ|1|A|G|243
*
6HHQ|1|A|C|250
6HHQ|1|A|A|251
6HHQ|1|A|U|252

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S4-A

Chain H

40S ribosomal protein S6-A

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A