J3_6I0Y_003

3D structure

PDB id

6I0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

TnaC-stalled ribosome complex with the titin I27 domain folding close to the ribosomal exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

6I0Y|1|A|U|686, 6I0Y|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6I0Y_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6I0Y|1|A|U|683
6I0Y|1|A|G|684
6I0Y|1|A|A|685
6I0Y|1|A|U|686
6I0Y|1|A|C|687
6I0Y|1|A|U|688
6I0Y|1|A|A|689
*
6I0Y|1|A|U|773
6I0Y|1|A|G|774
6I0Y|1|A|G|775
*
6I0Y|1|A|C|791
6I0Y|1|A|A|792
6I0Y|1|A|A|793
6I0Y|1|A|A|794

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain C

50S ribosomal protein L2