J3_6J6G_005

3D structure

PDB id

6J6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGG*CAUAGAAA*UC

Length

14 nucleotides

Bulged bases

6J6G|1|D|G|27, 6J6G|1|D|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6J6G|1|D|G|25
6J6G|1|D|A|26
6J6G|1|D|G|27
6J6G|1|D|G|28
*
6J6G|1|D|C|125
6J6G|1|D|A|126
6J6G|1|D|U|127
6J6G|1|D|A|128
6J6G|1|D|G|129
6J6G|1|D|A|130
6J6G|1|D|A|131
6J6G|1|D|A|132
*
6J6G|1|D|U|145
6J6G|1|D|C|146

Current chains

Chain D

U5 snRNA

Nearby chains

Chain T

Pre-mRNA-splicing factor BUD31