Loop J3_6KE6

3D structure

PDB id: 6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
Description: 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

Loop

Sequence: CAUUAAAUC*GCCC*GGUAACGGGGAAUAAGGGUUCGAUUCCGG
Length: 42 nucleotides
Bulged bases: 6KE6|1|SA|A|105, 6KE6|1|SA|C|308, 6KE6|1|SA|A|359, 6KE6|1|SA|C|361, 6KE6|1|SA|G|365, 6KE6|1|SA|G|371, 6KE6|1|SA|G|372, 6KE6|1|SA|G|373, 6KE6|1|SA|U|374, 6KE6|1|SA|U|375, 6KE6|1|SA|U|379
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6KE6|1|SA|C|99
6KE6|1|SA|A|100
6KE6|1|SA|U|101
6KE6|1|SA|U|102
6KE6|1|SA|A|103
6KE6|1|SA|A|104
6KE6|1|SA|A|105
6KE6|1|SA|U|106
6KE6|1|SA|C|107
*
6KE6|1|SA|G|307
6KE6|1|SA|C|308
6KE6|1|SA|C|309
6KE6|1|SA|C|310
*
6KE6|1|SA|G|356
6KE6|1|SA|G|357
6KE6|1|SA|U|358
6KE6|1|SA|A|359
6KE6|1|SA|A|360
6KE6|1|SA|C|361
6KE6|1|SA|G|362
6KE6|1|SA|G|363
6KE6|1|SA|G|364
6KE6|1|SA|G|365
6KE6|1|SA|A|366
6KE6|1|SA|A|367
6KE6|1|SA|U|368
6KE6|1|SA|A|369
6KE6|1|SA|A|370
6KE6|1|SA|G|371
6KE6|1|SA|G|372
6KE6|1|SA|G|373
6KE6|1|SA|U|374
6KE6|1|SA|U|375
6KE6|1|SA|C|376
6KE6|1|SA|G|377
6KE6|1|SA|A|378
6KE6|1|SA|U|379
6KE6|1|SA|U|380
6KE6|1|SA|C|381
6KE6|1|SA|C|382
6KE6|1|SA|G|383
6KE6|1|SA|G|384

Current chains

Chain SA: 18S rRNA

Nearby chains

Chain RB: U3 small nucleolar ribonucleoprotein protein LCP5
Chain SF: 40S ribosomal protein S4-A
Chain SJ: 40S ribosomal protein S8-A
Chain SK: 40S ribosomal protein S9-A
Chain SM: 40S ribosomal protein S11-A

J3_6KE6_007