J3_6KE6_008
3D structure
- PDB id
- 6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6KE6|1|SA|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6KE6_008 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1414
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6KE6|1|SA|U|633
6KE6|1|SA|G|634
6KE6|1|SA|A|635
*
6KE6|1|SA|U|861
6KE6|1|SA|A|862
6KE6|1|SA|A|863
6KE6|1|SA|U|864
6KE6|1|SA|A|865
6KE6|1|SA|G|866
*
6KE6|1|SA|C|962
6KE6|1|SA|A|963
6KE6|1|SA|U|964
6KE6|1|SA|U|965
6KE6|1|SA|A|966
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain RC
- KRR1 small subunit processome component
- Chain RV
- Protein FAF1
- Chain SO
- 40S ribosomal protein S13
- Chain SX
- 40S ribosomal protein S22-B
- Chain Sc
- 40S ribosomal protein S27-A
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