J3_6LAS_002
3D structure
- PDB id
- 6LAS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- the wildtype SAM-VI riboswitch bound to SAM
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.71 Å
Loop
- Sequence
- UGUG*CGAUAAGUC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6LAS|1|B|U|35, 6LAS|1|B|U|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LAS_002 not in the Motif Atlas
- Geometric match to J3_6LAX_001
- Geometric discrepancy: 0.1393
- The information below is about J3_6LAX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58090.1
- Basepair signature
- cWW-tWW-F-F-F-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6LAS|1|B|U|6
6LAS|1|B|G|7
6LAS|1|B|U|8
6LAS|1|B|G|9
*
6LAS|1|B|C|32
6LAS|1|B|G|33
6LAS|1|B|A|34
6LAS|1|B|U|35
6LAS|1|B|A|36
6LAS|1|B|A|37
6LAS|1|B|G|38
6LAS|1|B|U|39
6LAS|1|B|C|40
*
6LAS|1|B|G|49
6LAS|1|B|G|50
Current chains
- Chain B
- RNA (55-MER)
Nearby chains
- Chain C
- U1 small nuclear ribonucleoprotein A
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