J3_6LAX_002
3D structure
- PDB id
- 6LAX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- the mutant SAM-VI riboswitch (U6C) bound to SAM
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGUG*CGAUAAGUC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6LAX|1|B|U|35, 6LAX|1|B|U|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LAX_002 not in the Motif Atlas
- Geometric match to J3_6LAX_001
- Geometric discrepancy: 0.1377
- The information below is about J3_6LAX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58090.1
- Basepair signature
- cWW-tWW-F-F-F-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6LAX|1|B|C|6
6LAX|1|B|G|7
6LAX|1|B|U|8
6LAX|1|B|G|9
*
6LAX|1|B|C|32
6LAX|1|B|G|33
6LAX|1|B|A|34
6LAX|1|B|U|35
6LAX|1|B|A|36
6LAX|1|B|A|37
6LAX|1|B|G|38
6LAX|1|B|U|39
6LAX|1|B|C|40
*
6LAX|1|B|G|49
6LAX|1|B|G|50
Current chains
- Chain B
- RNA (55-MER)
Nearby chains
- Chain C
- U1 small nuclear ribonucleoprotein A
Coloring options: