J3_6LAZ_001
3D structure
- PDB id
- 6LAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- the wildtype SAM-VI riboswitch bound to a N-mustard SAM analog M1
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.76 Å
Loop
- Sequence
- UGUG*CGAUAAGUC*GG
- Length
- 15 nucleotides
- Bulged bases
- 6LAZ|1|A|U|35, 6LAZ|1|A|U|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6LAZ_001 not in the Motif Atlas
- Geometric match to J3_6LAX_001
- Geometric discrepancy: 0.272
- The information below is about J3_6LAX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58090.1
- Basepair signature
- cWW-tWW-F-F-F-cWW-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
6LAZ|1|A|U|6
6LAZ|1|A|G|7
6LAZ|1|A|U|8
6LAZ|1|A|G|9
*
6LAZ|1|A|C|32
6LAZ|1|A|G|33
6LAZ|1|A|A|34
6LAZ|1|A|U|35
6LAZ|1|A|A|36
6LAZ|1|A|A|37
6LAZ|1|A|G|38
6LAZ|1|A|U|39
6LAZ|1|A|C|40
*
6LAZ|1|A|G|49
6LAZ|1|A|G|50
Current chains
- Chain A
- RNA (55-MER)
Nearby chains
- Chain D
- U1 small nuclear ribonucleoprotein A
- Chain E
- U1 small nuclear ribonucleoprotein A
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