J3_6LQM_003

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6LQM|1|2|G|959, 6LQM|1|2|C|962, 6LQM|1|2|C|967, 6LQM|1|2|C|968, 6LQM|1|2|C|969, 6LQM|1|2|U|971, 6LQM|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|C|712
6LQM|1|2|C|713
*
6LQM|1|2|G|955
6LQM|1|2|A|956
6LQM|1|2|G|957
6LQM|1|2|G|958
6LQM|1|2|G|959
6LQM|1|2|A|960
6LQM|1|2|G|961
6LQM|1|2|C|962
6LQM|1|2|G|963
6LQM|1|2|A|964
6LQM|1|2|G|965
6LQM|1|2|A|966
6LQM|1|2|C|967
6LQM|1|2|C|968
6LQM|1|2|C|969
6LQM|1|2|G|970
6LQM|1|2|U|971
6LQM|1|2|C|972
6LQM|1|2|G|973
6LQM|1|2|C|974
6LQM|1|2|C|975
6LQM|1|2|G|976
*
6LQM|1|2|C|1278
6LQM|1|2|A|1279
6LQM|1|2|C|1280
6LQM|1|2|G|1281
6LQM|1|2|G|1282
6LQM|1|2|G|1283
6LQM|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain t

60S ribosomal protein L32

Chain v

60S ribosomal protein L6

Chain w

60S ribosomal protein L7