J3_6LQM_009

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

6LQM|1|2|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|A|2551
6LQM|1|2|G|2552
6LQM|1|2|A|2553
6LQM|1|2|U|2554
6LQM|1|2|G|2555
*
6LQM|1|2|C|2572
6LQM|1|2|A|2573
6LQM|1|2|G|2574
6LQM|1|2|U|2575
*
6LQM|1|2|A|2757
6LQM|1|2|G|2758
6LQM|1|2|G|2759
6LQM|1|2|G|2760
6LQM|1|2|U|2761
6LQM|1|2|G|2762
6LQM|1|2|U|2763
6LQM|1|2|A|2764
6LQM|1|2|A|2765
6LQM|1|2|A|2766
6LQM|1|2|U|2767

Current chains

Chain 2

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L27