J3_6LQM_011

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUG*CGGUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6LQM|1|2|U|3773, 6LQM|1|2|U|3818

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|C|3696
6LQM|1|2|U|3697
6LQM|1|2|G|3698
*
6LQM|1|2|C|3752
6LQM|1|2|G|3753
6LQM|1|2|G|3754
6LQM|1|2|U|3772
6LQM|1|2|U|3773
6LQM|1|2|A|3774
6LQM|1|2|A|3775
6LQM|1|2|G|3776
6LQM|1|2|G|3777
6LQM|1|2|U|3778
6LQM|1|2|A|3779
6LQM|1|2|G|3780
*
6LQM|1|2|U|3814
6LQM|1|2|G|3815
6LQM|1|2|A|3816
6LQM|1|2|A|3817
6LQM|1|2|U|3818
6LQM|1|2|G|3819

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain m

60S ribosomal protein L8