J3_6LQM_013

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC

Length

23 nucleotides

Bulged bases

6LQM|1|2|U|4374

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|G|4228
6LQM|1|2|U|4229
6LQM|1|2|C|4230
*
6LQM|1|2|G|4331
6LQM|1|2|C|4332
6LQM|1|2|C|4333
6LQM|1|2|U|4334
6LQM|1|2|5MC|4335
6LQM|1|2|A|4336
6LQM|1|2|C|4337
6LQM|1|2|G|4338
6LQM|1|2|A|4339
6LQM|1|2|U|4340
6LQM|1|2|C|4341
6LQM|1|2|C|4342
6LQM|1|2|U|4343
*
6LQM|1|2|A|4369
6LQM|1|2|OMG|4370
6LQM|1|2|MHG|4371
6LQM|1|2|U|4372
6LQM|1|2|G|4373
6LQM|1|2|U|4374
6LQM|1|2|C|4375

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain L

60S ribosomal protein L27a

Chain W

60S ribosomal protein L36a

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21