J3_6LQM_017

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

6LQM|1|5|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|5|C|9
6LQM|1|5|C|10
6LQM|1|5|A|11
6LQM|1|5|U|12
6LQM|1|5|A|13
6LQM|1|5|C|14
*
6LQM|1|5|G|65
6LQM|1|5|G|66
6LQM|1|5|C|67
*
6LQM|1|5|G|108
6LQM|1|5|U|109
6LQM|1|5|G|110

Current chains

Chain 5

5S rRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain J

60S ribosomal protein L10-like

Chain c

60S ribosomal protein L21

Chain r

60S ribosomal protein L5