J3_6LSS_001

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

6LSS|1|2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|112
6LSS|1|2|A|113
6LSS|1|2|G|114
6LSS|1|2|C|115
6LSS|1|2|G|116
*
6LSS|1|2|C|155
6LSS|1|2|G|156
6LSS|1|2|U|157
6LSS|1|2|A|158
6LSS|1|2|C|159
6LSS|1|2|G|160
*
6LSS|1|2|C|275
6LSS|1|2|C|276
6LSS|1|2|G|277
6LSS|1|2|G|278

Current chains

Chain 2

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain H

60S ribosomal protein L35

Chain K

60S ribosomal protein L36

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15