J3_6LSS_003

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6LSS|1|2|G|959, 6LSS|1|2|C|962, 6LSS|1|2|C|967, 6LSS|1|2|C|968, 6LSS|1|2|U|971, 6LSS|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|712
6LSS|1|2|C|713
*
6LSS|1|2|G|955
6LSS|1|2|A|956
6LSS|1|2|G|957
6LSS|1|2|G|958
6LSS|1|2|G|959
6LSS|1|2|A|960
6LSS|1|2|G|961
6LSS|1|2|C|962
6LSS|1|2|G|963
6LSS|1|2|A|964
6LSS|1|2|G|965
6LSS|1|2|A|966
6LSS|1|2|C|967
6LSS|1|2|C|968
6LSS|1|2|C|969
6LSS|1|2|G|970
6LSS|1|2|U|971
6LSS|1|2|C|972
6LSS|1|2|G|973
6LSS|1|2|C|974
6LSS|1|2|C|975
6LSS|1|2|G|976
*
6LSS|1|2|C|1278
6LSS|1|2|A|1279
6LSS|1|2|C|1280
6LSS|1|2|G|1281
6LSS|1|2|G|1282
6LSS|1|2|G|1283
6LSS|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7