J3_6LSS_009

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|A|2551
6LSS|1|2|G|2552
6LSS|1|2|A|2553
6LSS|1|2|U|2554
6LSS|1|2|G|2555
*
6LSS|1|2|C|2572
6LSS|1|2|A|2573
6LSS|1|2|G|2574
6LSS|1|2|U|2575
*
6LSS|1|2|A|2757
6LSS|1|2|G|2758
6LSS|1|2|G|2759
6LSS|1|2|G|2760
6LSS|1|2|U|2761
6LSS|1|2|G|2762
6LSS|1|2|U|2763
6LSS|1|2|A|2764
6LSS|1|2|A|2765
6LSS|1|2|A|2766
6LSS|1|2|U|2767

Current chains

Chain 2

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L27