J3_6LSS_026

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

6LSS|1|2|U|4882, 6LSS|1|2|A|4938, 6LSS|1|2|C|4940, 6LSS|1|2|A|4943, 6LSS|1|2|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|G|4751
6LSS|1|2|U|4752
6LSS|1|2|U|4753
6LSS|1|2|G|4754
*
6LSS|1|2|C|4879
6LSS|1|2|C|4880
6LSS|1|2|U|4881
6LSS|1|2|U|4882
6LSS|1|2|C|4883
*
6LSS|1|2|G|4936
6LSS|1|2|C|4937
6LSS|1|2|A|4938
6LSS|1|2|C|4939
6LSS|1|2|C|4940
6LSS|1|2|G|4941
6LSS|1|2|C|4942
6LSS|1|2|A|4943
6LSS|1|2|C|4944
6LSS|1|2|G|4945
6LSS|1|2|U|4946
6LSS|1|2|U|4947
6LSS|1|2|C|4948

Current chains

Chain 2

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L14

Chain V

60S ribosomal protein L13a

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6