J3_6LSS_028

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCAUAC*GG*UG

Length

10 nucleotides

Bulged bases

6LSS|1|5|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6LSS_028 not in the Motif Atlas

Homologous match to J3_8C3A_059

Geometric discrepancy: 0.1254

The information below is about J3_8C3A_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12003.1

Basepair signature

cWW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

6LSS|1|5|C|9
6LSS|1|5|C|10
6LSS|1|5|A|11
6LSS|1|5|U|12
6LSS|1|5|A|13
6LSS|1|5|C|14
*
6LSS|1|5|G|65
6LSS|1|5|G|66
*
6LSS|1|5|U|109
6LSS|1|5|G|110

Current chains

Chain 5

5S rRNA

Nearby chains

Chain c

60S ribosomal protein L21

Chain r

60S ribosomal protein L5