J3_6LU8_003

3D structure

PDB id

6LU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

6LU8|1|2|C|962, 6LU8|1|2|C|967, 6LU8|1|2|U|971, 6LU8|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LU8|1|2|C|712
6LU8|1|2|C|713
*
6LU8|1|2|G|955
6LU8|1|2|A|956
6LU8|1|2|G|957
6LU8|1|2|G|958
6LU8|1|2|G|959
6LU8|1|2|A|960
6LU8|1|2|G|961
6LU8|1|2|C|962
6LU8|1|2|G|963
6LU8|1|2|A|964
6LU8|1|2|G|965
6LU8|1|2|A|966
6LU8|1|2|C|967
6LU8|1|2|C|968
6LU8|1|2|C|969
6LU8|1|2|G|970
6LU8|1|2|U|971
6LU8|1|2|C|972
6LU8|1|2|G|973
6LU8|1|2|C|974
6LU8|1|2|C|975
6LU8|1|2|G|976
*
6LU8|1|2|C|1278
6LU8|1|2|A|1279
6LU8|1|2|C|1280
6LU8|1|2|G|1281
6LU8|1|2|G|1282
6LU8|1|2|G|1283
6LU8|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7