J3_6MEC_001

3D structure

PDB id

6MEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a group II intron retroelement after DNA integration

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUAG*CGACAAUG*CUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MEC|1|A|C|82
6MEC|1|A|U|83
6MEC|1|A|A|84
6MEC|1|A|G|85
*
6MEC|1|A|C|128
6MEC|1|A|G|129
6MEC|1|A|A|130
6MEC|1|A|C|131
6MEC|1|A|A|132
6MEC|1|A|A|133
6MEC|1|A|U|134
6MEC|1|A|G|135
*
6MEC|1|A|C|208
6MEC|1|A|U|209
6MEC|1|A|A|210
6MEC|1|A|G|211

Current chains

Chain A

T.el4h RNA

Nearby chains

Chain B

Sense Target DNA