J3_6MEC_005

3D structure

PDB id

6MEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a group II intron retroelement after DNA integration

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGAAU*AACC*GGUAAA

Length

16 nucleotides

Bulged bases

6MEC|1|A|A|614, 6MEC|1|A|A|719

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6MEC|1|A|U|611
6MEC|1|A|U|612
6MEC|1|A|G|613
6MEC|1|A|A|614
6MEC|1|A|A|615
6MEC|1|A|U|616
*
6MEC|1|A|A|663
6MEC|1|A|A|664
6MEC|1|A|C|665
6MEC|1|A|C|666
*
6MEC|1|A|G|716
6MEC|1|A|G|717
6MEC|1|A|U|718
6MEC|1|A|A|719
6MEC|1|A|A|720
6MEC|1|A|A|721

Current chains

Chain A

T.el4h RNA

Nearby chains